X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.141.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.108α = 90
b = 43.387β = 90.43
c = 70.684γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayIMAGE PLATERIGAKU RAXIS IV2007-08-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH3R1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.575073.50.0392.344162
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.571.635.70.7671.3343

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.727.2741799212688.580.1910.1890.237RANDOM26.993
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.28-0.01-1.391.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.453
r_dihedral_angle_4_deg21.069
r_dihedral_angle_3_deg12.917
r_dihedral_angle_1_deg5.247
r_scangle_it2.046
r_scbond_it1.321
r_angle_refined_deg1.191
r_mcangle_it0.839
r_mcbond_it0.507
r_nbtor_refined0.309
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.453
r_dihedral_angle_4_deg21.069
r_dihedral_angle_3_deg12.917
r_dihedral_angle_1_deg5.247
r_scangle_it2.046
r_scbond_it1.321
r_angle_refined_deg1.191
r_mcangle_it0.839
r_mcbond_it0.507
r_nbtor_refined0.309
r_nbd_refined0.196
r_symmetry_vdw_refined0.166
r_xyhbond_nbd_refined0.123
r_symmetry_hbond_refined0.088
r_chiral_restr0.081
r_bond_refined_d0.008
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3642
Nucleic Acid Atoms
Solvent Atoms563
Heterogen Atoms74

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction