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PLK1 in complex with BI6727
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.62 53.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.616 α = 90 b = 66.616 β = 90 c = 153.969 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 98.3 0.094 14942 -3 42.73
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.58 98.6 0.568 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.45 46.18 14942 374 100 0.184 0.183 0.1907 0.226 0.2236 RANDOM 37.586
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.35 1.17 2.35 -3.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.442 r_dihedral_angle_4_deg 18.317 r_dihedral_angle_3_deg 15.825 r_dihedral_angle_1_deg 5.862 r_scangle_it 5.285 r_scbond_it 3.779 r_mcangle_it 2.353 r_mcbond_it 1.85 r_angle_refined_deg 1.222 r_angle_other_deg 0.767
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.442 r_dihedral_angle_4_deg 18.317 r_dihedral_angle_3_deg 15.825 r_dihedral_angle_1_deg 5.862 r_scangle_it 5.285 r_scbond_it 3.779 r_mcangle_it 2.353 r_mcbond_it 1.85 r_angle_refined_deg 1.222 r_angle_other_deg 0.767 r_mcbond_other 0.385 r_symmetry_vdw_other 0.227 r_nbd_refined 0.201 r_symmetry_hbond_refined 0.194 r_nbd_other 0.189 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.135 r_nbtor_other 0.084 r_symmetry_vdw_refined 0.083 r_chiral_restr 0.072 r_metal_ion_refined 0.031 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2373 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 83
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing