☰ Navigation Tabs
Crystal Structure of the S139A mutant of SARS-Coronovirus 3C-like Protease
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 277 0.1M MES pH 6.0, 10% PEG 6000, 1mM DTT, 5% DMSO, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.13 42.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.27 α = 90 b = 65.979 β = 90 c = 128.189 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2008-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 15 98.7 0.135 3.61 10488
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 99.9 0.378 2 3.79 1036
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.5 14.86 10487 506 98.74 0.255 0.252 0.249 0.308 0.3051 RANDOM 36.162
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.89 -2.79 3.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.881 r_dihedral_angle_3_deg 16.017 r_dihedral_angle_4_deg 9.415 r_dihedral_angle_1_deg 5.418 r_angle_refined_deg 0.933 r_scangle_it 0.642 r_mcangle_it 0.509 r_scbond_it 0.38 r_nbtor_refined 0.3 r_mcbond_it 0.284
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.881 r_dihedral_angle_3_deg 16.017 r_dihedral_angle_4_deg 9.415 r_dihedral_angle_1_deg 5.418 r_angle_refined_deg 0.933 r_scangle_it 0.642 r_mcangle_it 0.509 r_scbond_it 0.38 r_nbtor_refined 0.3 r_mcbond_it 0.284 r_nbd_refined 0.176 r_symmetry_hbond_refined 0.118 r_symmetry_vdw_refined 0.114 r_xyhbond_nbd_refined 0.11 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2309 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms
Software Software Software Name Purpose d*TREK data scaling REFMAC refinement PDB_EXTRACT data extraction