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The Crystal Structure of Human Lambda-Crystallin, CRYL1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2DPO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 2M (NH4)2SO4, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.91 57.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.085 α = 90 b = 102.085 β = 90 c = 134.986 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR225 2008-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.99987 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 47.73 100 0.128 0.128 11.7 8.9 53793 33
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 100 1.297 1.297 2.5 8.9 69408
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2DPO 2 47.73 51002 51002 2731 99.98 0.15654 0.15654 0.15447 0.1623 0.19629 0.1986 RANDOM 28.408
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.06 -0.53 -1.06 1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.841 r_dihedral_angle_4_deg 19.981 r_dihedral_angle_3_deg 13.404 r_scangle_it 9.386 r_scbond_it 7.414 r_dihedral_angle_1_deg 5.352 r_mcangle_it 4.955 r_mcbond_it 3.926 r_mcbond_other 1.652 r_angle_refined_deg 1.463
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.841 r_dihedral_angle_4_deg 19.981 r_dihedral_angle_3_deg 13.404 r_scangle_it 9.386 r_scbond_it 7.414 r_dihedral_angle_1_deg 5.352 r_mcangle_it 4.955 r_mcbond_it 3.926 r_mcbond_other 1.652 r_angle_refined_deg 1.463 r_angle_other_deg 0.91 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4754 Nucleic Acid Atoms Solvent Atoms 332 Heterogen Atoms 136
Software Software Software Name Purpose MAR345 data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling