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Crystal structure of the catalytic domain of human MMP12 complexed with the inhibitor N-(2-nitroso-2-oxoethyl)biphenyl-4-sulfonamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.1M TRIS, 30% PEG 6000, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.18 43.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.636 α = 90 b = 60.25 β = 115.44 c = 54.22 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2004-09-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.91677 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 20 86.5 0.061 0.061 16.1 3.4 52343 52343 7.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.1 1.16 49.1 0.084 0.084 7.5 2.4 4317
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.1 19.59 48255 48255 4087 100 0.17099 0.17099 0.17015 0.1781 0.18096 0.1906 RANDOM 9.687
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -0.06 0.03 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.268 r_dihedral_angle_4_deg 12.089 r_dihedral_angle_3_deg 10.515 r_dihedral_angle_1_deg 6.147 r_sphericity_free 3.077 r_sphericity_bonded 2.366 r_scangle_it 2.311 r_scbond_it 1.533 r_angle_refined_deg 1.468 r_mcangle_it 1.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.268 r_dihedral_angle_4_deg 12.089 r_dihedral_angle_3_deg 10.515 r_dihedral_angle_1_deg 6.147 r_sphericity_free 3.077 r_sphericity_bonded 2.366 r_scangle_it 2.311 r_scbond_it 1.533 r_angle_refined_deg 1.468 r_mcangle_it 1.311 r_mcbond_it 0.874 r_rigid_bond_restr 0.836 r_angle_other_deg 0.712 r_mcbond_other 0.373 r_chiral_restr 0.236 r_symmetry_vdw_other 0.23 r_symmetry_vdw_refined 0.208 r_nbd_refined 0.2 r_nbtor_refined 0.187 r_nbd_other 0.17 r_symmetry_hbond_refined 0.119 r_xyhbond_nbd_refined 0.116 r_metal_ion_refined 0.087 r_nbtor_other 0.081 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1238 Nucleic Acid Atoms Solvent Atoms 252 Heterogen Atoms 26
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling