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Crystal structure of the catalytic domain of human MMP12 complexed with the inhibitor (R)-N-(3-hydroxy-1-nitroso-1-oxopropan-2-yl)-4-methoxybenzenesulfonamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.1M TRIS, 30% PEG 6000, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.882 α = 90 b = 60.366 β = 114.37 c = 53.953 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2004-09-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.91677 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 40 96.5 0.054 17 3.6 50127 50127 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.16 1.22 81.8 0.08 13 2.6 6162
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.16 37.22 45534 45534 4592 100 0.16301 0.16301 0.16114 0.18172 0.209 RANDOM 9.452
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -0.07 -0.01 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.219 r_dihedral_angle_3_deg 9.443 r_dihedral_angle_1_deg 5.73 r_dihedral_angle_4_deg 4.07 r_sphericity_free 1.967 r_scangle_it 1.929 r_sphericity_bonded 1.849 r_scbond_it 1.361 r_angle_refined_deg 1.127 r_mcangle_it 1.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.219 r_dihedral_angle_3_deg 9.443 r_dihedral_angle_1_deg 5.73 r_dihedral_angle_4_deg 4.07 r_sphericity_free 1.967 r_scangle_it 1.929 r_sphericity_bonded 1.849 r_scbond_it 1.361 r_angle_refined_deg 1.127 r_mcangle_it 1.058 r_rigid_bond_restr 0.774 r_mcbond_it 0.708 r_symmetry_hbond_refined 0.311 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.208 r_nbd_refined 0.189 r_xyhbond_nbd_refined 0.101 r_chiral_restr 0.088 r_metal_ion_refined 0.086 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1238 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 24
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling