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Cleaved human neuroserpin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JJO PDB ENTRY 1JJO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 293 Ammonium sulphate, Na acetate, PEG MME 2000, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.28 46.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.928 α = 90 b = 100.066 β = 90 c = 115.825 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 4 2008-07-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.933 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40 99.6 0.105 13 7 78887 20.34
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 97.3 0.79 2 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1JJO 1.8 19.72 74815 3961 99.56 0.19322 0.19101 0.23511 0.2461 RANDOM 18.111
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.861 r_dihedral_angle_4_deg 16.976 r_dihedral_angle_3_deg 15.555 r_dihedral_angle_1_deg 6.529 r_scangle_it 3.607 r_scbond_it 2.248 r_angle_refined_deg 1.474 r_mcangle_it 1.388 r_angle_other_deg 1.378 r_mcbond_it 0.763
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.861 r_dihedral_angle_4_deg 16.976 r_dihedral_angle_3_deg 15.555 r_dihedral_angle_1_deg 6.529 r_scangle_it 3.607 r_scbond_it 2.248 r_angle_refined_deg 1.474 r_mcangle_it 1.388 r_angle_other_deg 1.378 r_mcbond_it 0.763 r_mcbond_other 0.194 r_chiral_restr 0.078 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5788 Nucleic Acid Atoms Solvent Atoms 551 Heterogen Atoms
Software Software Software Name Purpose MxCuBE data collection PHASES phasing REFMAC refinement MOSFLM data reduction SCALA data scaling