☰ Navigation Tabs
Crystal structure of the human Adenovirus type 11 fiber knob
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H7Z Human Adenovirus type 3 fiber knob
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293.15 18% w/v PEG6000, 0.1M HEPES buffer, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
Crystal Properties Matthews coefficient Solvent content 1.79 31.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.597 α = 90 b = 100.597 β = 90 c = 100.597 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD MARMOSAIC 225 mm CCD 2006-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 71 99.9 0.045 6 30079 28526 -3 14.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.5 100 0.388 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Human Adenovirus type 3 fiber knob 1.45 23.71 30079 28526 1525 99.93 0.19365 0.19204 0.1986 0.2246 0.2288 RANDOM 9.959
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.106 r_dihedral_angle_4_deg 12.861 r_dihedral_angle_3_deg 10.705 r_dihedral_angle_1_deg 8.391 r_scangle_it 1.096 r_angle_refined_deg 0.918 r_scbond_it 0.765 r_angle_other_deg 0.679 r_mcangle_it 0.615 r_mcbond_it 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.106 r_dihedral_angle_4_deg 12.861 r_dihedral_angle_3_deg 10.705 r_dihedral_angle_1_deg 8.391 r_scangle_it 1.096 r_angle_refined_deg 0.918 r_scbond_it 0.765 r_angle_other_deg 0.679 r_mcangle_it 0.615 r_mcbond_it 0.55 r_symmetry_vdw_other 0.21 r_nbd_other 0.192 r_nbd_refined 0.184 r_nbtor_refined 0.174 r_symmetry_vdw_refined 0.108 r_xyhbond_nbd_refined 0.088 r_nbtor_other 0.08 r_symmetry_hbond_refined 0.073 r_chiral_restr 0.059 r_mcbond_other 0.054 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1579 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms
Software Software Software Name Purpose MAR345dtb data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling