☰ Navigation Tabs
A glycoside hydrolase family 11 xylanase with an extended thumb region
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BCX PDB ENTRY 1bcx
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 0.2M ammonium sulfate, 0.1M MES (pH 6.5), 30% PEG mme 5000, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.36 47.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.91 α = 90 b = 51.88 β = 94.2 c = 84.73 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0011 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 34 87.7 0.076 16 4 34975 30673
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.81 1.91 80 0.275 3.8 4 4055
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1bcx 1.81 32.76 34975 29122 1541 87.88 0.19259 0.19051 0.1901 0.23152 0.2313 RANDOM 18.571
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 -0.02 -0.31 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.338 r_dihedral_angle_3_deg 12.92 r_dihedral_angle_4_deg 12.858 r_dihedral_angle_1_deg 7.413 r_scangle_it 1.891 r_scbond_it 1.432 r_angle_refined_deg 1.219 r_mcangle_it 1.045 r_mcbond_it 0.585 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.338 r_dihedral_angle_3_deg 12.92 r_dihedral_angle_4_deg 12.858 r_dihedral_angle_1_deg 7.413 r_scangle_it 1.891 r_scbond_it 1.432 r_angle_refined_deg 1.219 r_mcangle_it 1.045 r_mcbond_it 0.585 r_nbtor_refined 0.307 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.176 r_symmetry_hbond_refined 0.161 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.111 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2802 Nucleic Acid Atoms Solvent Atoms 263 Heterogen Atoms 24
Software Software Software Name Purpose PHASER phasing REFMAC refinement iMOSFLM data reduction SCALA data scaling