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Structure of the CS domain of the essential H/ACA RNP assembly protein Shq1p
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 298 0.1 M Bis-Tris HCl,0.2 M Ammonium Sulfate
25% w/v PEG 3350, pH 6.0, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.04 65.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.938 α = 90 b = 146.293 β = 90 c = 48.511 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 315 mirrors 2007-11-08 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97949 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 90 95.2 0.067 24.621 6.9 39269 37.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 61.5 0.398 2.4 4701
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.4 35.416 39133 1959 96.74 0.228 0.2233 0.248 0.2421 RANDOM 52.794
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.174 -1.327 1.502
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 18.164 f_nbd_refined 4.129 f_angle_d 1.286 f_chiral_restr 0.08 f_bond_d 0.01 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4848 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling DM phasing PHENIX refinement PDB_EXTRACT data extraction HKL2Map phasing