☰ Navigation Tabs
2.1 A structure of acyl-adenylate synthetase from Methanosarcina acetivorans containing a link between Lys256 and Cys298
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 80 % PEG 400, 100 mM MgNO3, 50 mM HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.36 47.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.699 α = 90 b = 96.371 β = 90 c = 141.543 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 CCD MARMOSAIC 325 mm CCD 2006-07-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.9879, 0.97894, 0.97928, 0.95665 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 40 99.9 0.082 9.4 72853 72781 -3 28.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.2 99.7 0.487 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 29.88 70094 3703 99.93 0.17676 0.17517 0.20653 0.2027 RANDOM 27.336
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.973 r_dihedral_angle_4_deg 16.603 r_dihedral_angle_3_deg 13.983 r_dihedral_angle_1_deg 5.804 r_scangle_it 2.141 r_scbond_it 1.359 r_angle_refined_deg 1.168 r_mcangle_it 0.909 r_mcbond_it 0.561 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.973 r_dihedral_angle_4_deg 16.603 r_dihedral_angle_3_deg 13.983 r_dihedral_angle_1_deg 5.804 r_scangle_it 2.141 r_scbond_it 1.359 r_angle_refined_deg 1.168 r_mcangle_it 0.909 r_mcbond_it 0.561 r_nbtor_refined 0.308 r_nbd_refined 0.196 r_symmetry_hbond_refined 0.181 r_symmetry_vdw_refined 0.153 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.08 r_metal_ion_refined 0.017 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8396 Nucleic Acid Atoms Solvent Atoms 429 Heterogen Atoms 163
Software Software Software Name Purpose Blu-Ice data collection SnB phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling