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cut-1c; NCN-Pt-Pincer-Cutinase Hybrid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CUA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 291 2%(w/v) PEG-1000, 0.1M 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid(Hepes), pH 6.0, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.19 61.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.976 α = 90 b = 69.976 β = 90 c = 100.666 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 39 97 0.078 14.6 7.2 12784
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 100 0.078 3.3 7.3 1903
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1CUA 2.3 33.56 12132 624 97 0.21636 0.21475 0.2057 0.24657 0.2331 RANDOM 42.107
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.27 0.64 1.27 -1.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.393 r_dihedral_angle_4_deg 17.868 r_dihedral_angle_3_deg 16.316 r_dihedral_angle_1_deg 5.961 r_scangle_it 3.457 r_scbond_it 2.123 r_angle_refined_deg 1.562 r_mcangle_it 1.34 r_mcbond_it 0.731 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.393 r_dihedral_angle_4_deg 17.868 r_dihedral_angle_3_deg 16.316 r_dihedral_angle_1_deg 5.961 r_scangle_it 3.457 r_scbond_it 2.123 r_angle_refined_deg 1.562 r_mcangle_it 1.34 r_mcbond_it 0.731 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.219 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.145 r_symmetry_hbond_refined 0.123 r_chiral_restr 0.083 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1448 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 24
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling