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cut-1b; NCN-Pt-Pincer-Cutinase Hybrid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CUA PDB ENTRY 1CUA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.5 291 22%(w/v) PEG-6000, 0.1M sodium acetate, 0.2M sodium chloride, pH 5.5, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.86 33.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.97 α = 90 b = 71.859 β = 96.94 c = 68.568 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9395 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 36 95 0.089 13.6 3.5 22076
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.11 99.5 0.41 2.4 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CUA 2 33.73 20936 1122 99.43 0.20164 0.19873 0.222 0.25348 0.2617 RANDOM 37.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.27 0.39 -2.46 -2.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.122 r_dihedral_angle_4_deg 16.456 r_dihedral_angle_3_deg 15.198 r_dihedral_angle_1_deg 5.845 r_scangle_it 2.139 r_angle_refined_deg 1.596 r_scbond_it 1.532 r_mcangle_it 0.906 r_mcbond_it 0.581 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.122 r_dihedral_angle_4_deg 16.456 r_dihedral_angle_3_deg 15.198 r_dihedral_angle_1_deg 5.845 r_scangle_it 2.139 r_angle_refined_deg 1.596 r_scbond_it 1.532 r_mcangle_it 0.906 r_mcbond_it 0.581 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.296 r_nbd_refined 0.202 r_symmetry_hbond_refined 0.197 r_xyhbond_nbd_refined 0.146 r_chiral_restr 0.08 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2901 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 48
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling