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Crystal structure of IBV X-domain at pH 5.6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 285.15 0.8 M AMMONIUM SULFATE, 0.1 M NA-CITRATE PH 5.6, 0.2 M K-,NA-TARTRATE, TEMPERATURE 285.15 K
Crystal Properties Matthews coefficient Solvent content 3.71 66.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.2 α = 90 b = 78.2 β = 90 c = 81.701 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 67.73 98.4 0.079 0.079 6.341 11.5 17123 32.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.21 89.4 0.401 0.401 1.9 10.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 67.73 16102 17103 1001 99.2 0.201 0.199 0.1982 0.231 0.2356 RANDOM 32.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.51 0.75 1.51 -2.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.012 r_dihedral_angle_3_deg 16.102 r_dihedral_angle_4_deg 15.176 r_dihedral_angle_1_deg 7.16 r_scangle_it 3.811 r_scbond_it 2.816 r_angle_refined_deg 1.896 r_mcangle_it 1.892 r_mcbond_it 1.576 r_angle_other_deg 1.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.012 r_dihedral_angle_3_deg 16.102 r_dihedral_angle_4_deg 15.176 r_dihedral_angle_1_deg 7.16 r_scangle_it 3.811 r_scbond_it 2.816 r_angle_refined_deg 1.896 r_mcangle_it 1.892 r_mcbond_it 1.576 r_angle_other_deg 1.07 r_mcbond_other 0.277 r_nbd_refined 0.217 r_nbd_other 0.207 r_nbtor_refined 0.197 r_symmetry_vdw_other 0.195 r_symmetry_hbond_refined 0.152 r_xyhbond_nbd_refined 0.148 r_chiral_restr 0.133 r_symmetry_vdw_refined 0.116 r_nbtor_other 0.1 r_bond_refined_d 0.022 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1330 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms 20
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction PHASER phasing