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Structure of the alcaligin outer membrane recepteur FauA from Bordetella pertussis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2O5P PDB ENTRY 2O5P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.75% C8E4, 0.1M HEPES, pH7.5, 0.3-0.5M NH4SO4, 13-17% MPD, protein concentration 10mg/ml, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.11 60.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 165.893 α = 90 b = 188.847 β = 90 c = 62.437 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 FLAT PANEL 2008-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9789 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.33 29.42 99.8 0.066 42320 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.33 2.4 100 0.724
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2O5P 2.33 29.35 40176 40176 2141 100 0.22091 0.21892 0.25843 0.2678 RANDOM 45.904
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 -2.96 1.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.776 r_dihedral_angle_4_deg 18 r_dihedral_angle_3_deg 16.054 r_dihedral_angle_1_deg 7.253 r_scangle_it 3.498 r_scbond_it 2.249 r_angle_refined_deg 1.565 r_mcangle_it 1.539 r_mcbond_it 0.91 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.776 r_dihedral_angle_4_deg 18 r_dihedral_angle_3_deg 16.054 r_dihedral_angle_1_deg 7.253 r_scangle_it 3.498 r_scbond_it 2.249 r_angle_refined_deg 1.565 r_mcangle_it 1.539 r_mcbond_it 0.91 r_nbtor_refined 0.3 r_symmetry_hbond_refined 0.219 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.182 r_xyhbond_nbd_refined 0.172 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4384 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 10
Software Software Software Name Purpose MOLREP phasing REFMAC refinement XDS data reduction XDS data scaling