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Structure of NS1 effector domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GX9 PDBid: 2GX9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 298 12% (w/v) PEG3350, and 4% (v/v) Tacsimate (pH6.0), VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.57 52.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.818 α = 90 b = 74.028 β = 90 c = 121.88 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate VariMax 2008-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 85.7 0.06 32 6.8 7841 7841
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.59 2.68 26.3 0.149 3.7 1.8 236
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT PDBid: 2GX9 2.6 30 7261 352 83.95 0.201 0.197 0.2027 0.284 0.28 RANDOM 46.167
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.24 -1.62 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.913 r_dihedral_angle_3_deg 17.367 r_dihedral_angle_4_deg 15.602 r_dihedral_angle_1_deg 7.018 r_scangle_it 6.825 r_scbond_it 4.675 r_mcangle_it 3.042 r_mcbond_it 2.305 r_angle_refined_deg 1.482 r_angle_other_deg 0.846
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.913 r_dihedral_angle_3_deg 17.367 r_dihedral_angle_4_deg 15.602 r_dihedral_angle_1_deg 7.018 r_scangle_it 6.825 r_scbond_it 4.675 r_mcangle_it 3.042 r_mcbond_it 2.305 r_angle_refined_deg 1.482 r_angle_other_deg 0.846 r_mcbond_other 0.305 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.219 r_symmetry_vdw_other 0.206 r_nbd_other 0.194 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.134 r_nbtor_other 0.088 r_chiral_restr 0.082 r_symmetry_hbond_refined 0.064 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1923 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection DENZO data reduction SCALEPACK data scaling HKL-2000 data scaling MOLREP phasing