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Crystal structure of Flavoprotein in Complex with FMN (YP_193882.1) from Lactobacillus acidophilus NCFM at 1.20 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 277 0.2000M NH4H2PO3, 20.0000% PEG-3350, No Buffer pH 4.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.63 53.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.56 α = 90 b = 52.03 β = 90 c = 156.75 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97910 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 29.424 95.9 0.067 7.6 114258 -3 10.258
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 1.24 88.4 0.459 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.2 29.424 114155 5724 99.41 0.137 0.136 0.1405 0.16 0.1631 RANDOM 15.836
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 0.36 -0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.761 r_dihedral_angle_3_deg 10.352 r_dihedral_angle_4_deg 7.8 r_sphericity_free 7.014 r_dihedral_angle_1_deg 5.973 r_scangle_it 3.807 r_sphericity_bonded 3.719 r_scbond_it 2.711 r_mcangle_it 2.014 r_mcbond_it 1.465
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.761 r_dihedral_angle_3_deg 10.352 r_dihedral_angle_4_deg 7.8 r_sphericity_free 7.014 r_dihedral_angle_1_deg 5.973 r_scangle_it 3.807 r_sphericity_bonded 3.719 r_scbond_it 2.711 r_mcangle_it 2.014 r_mcbond_it 1.465 r_angle_refined_deg 1.422 r_rigid_bond_restr 1.36 r_angle_other_deg 0.868 r_mcbond_other 0.649 r_symmetry_vdw_other 0.301 r_symmetry_vdw_refined 0.277 r_nbd_refined 0.22 r_symmetry_hbond_refined 0.205 r_nbtor_refined 0.188 r_nbd_other 0.182 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.089 r_nbtor_other 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2538 Nucleic Acid Atoms Solvent Atoms 616 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing