☰ Navigation Tabs
Crystal structure of an rmlc-like cupin protein (reut_a0381) from ralstonia eutropha jmp134 at 2.60 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 60.0% polyethylene glycol 200, 0.1M HEPES pH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.77 55.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.157 α = 90 b = 91.157 β = 90 c = 48.753 γ = 90
Symmetry Space Group P 42 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-06-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97941,0.97854 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 28.831 99.9 0.074 0.074 15.1 4.7 6713 76.248
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.67 100 0.596 0.596 2.2 4.8 476
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.6 28.831 6707 498 99.79 0.229 0.227 0.2301 0.262 0.2637 RANDOM 48.516
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 0.28 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.456 r_dihedral_angle_3_deg 10.173 r_dihedral_angle_4_deg 5.639 r_scangle_it 4.343 r_scbond_it 3.098 r_dihedral_angle_1_deg 2.404 r_angle_refined_deg 1.885 r_mcangle_it 1.869 r_angle_other_deg 1.532 r_mcbond_it 1.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.456 r_dihedral_angle_3_deg 10.173 r_dihedral_angle_4_deg 5.639 r_scangle_it 4.343 r_scbond_it 3.098 r_dihedral_angle_1_deg 2.404 r_angle_refined_deg 1.885 r_mcangle_it 1.869 r_angle_other_deg 1.532 r_mcbond_it 1.077 r_symmetry_hbond_refined 0.184 r_mcbond_other 0.173 r_nbtor_refined 0.162 r_xyhbond_nbd_refined 0.134 r_nbd_refined 0.132 r_nbd_other 0.12 r_symmetry_vdw_refined 0.09 r_symmetry_vdw_other 0.085 r_nbtor_other 0.077 r_chiral_restr 0.07 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1225 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHARP phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction