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Glycogen Phosphorylase b/flavopiridol complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HLF PDB entry 1HLF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SMALL TUBES 6.7 289 BES, EDTA, pH 6.7, SMALL TUBES, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.47 50.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.653 α = 90 b = 128.653 β = 90 c = 116.489 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD MAR CCD 165 mm 2005-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.813 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 90.91 98.8 0.047 17.2 4.1 65099 61747 -3 28.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.04 99.9 0.396 3.8 4.1 4447
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB entry 1HLF 2 29.53 61747 3304 98.61 0.18968 0.1883 0.187 0.21525 0.2155 RANDOM 30.655
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 0.79 -1.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.72 r_dihedral_angle_4_deg 18.881 r_dihedral_angle_3_deg 15.158 r_dihedral_angle_1_deg 5.116 r_scangle_it 2.019 r_scbond_it 1.24 r_angle_refined_deg 1.035 r_mcangle_it 0.905 r_mcbond_it 0.539 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.72 r_dihedral_angle_4_deg 18.881 r_dihedral_angle_3_deg 15.158 r_dihedral_angle_1_deg 5.116 r_scangle_it 2.019 r_scbond_it 1.24 r_angle_refined_deg 1.035 r_mcangle_it 0.905 r_mcbond_it 0.539 r_nbtor_refined 0.302 r_nbd_refined 0.181 r_symmetry_vdw_refined 0.146 r_xyhbond_nbd_refined 0.097 r_chiral_restr 0.075 r_symmetry_hbond_refined 0.052 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6604 Nucleic Acid Atoms Solvent Atoms 286 Heterogen Atoms 28
Software Software Software Name Purpose MAR345dtb data collection REFMAC refinement DENZO data reduction SCALEPACK data scaling REFMAC phasing