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Structure of the cIAP2 RING domain bound to UbcH5b
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.3 291 3.3 M NaCl, 0.1 M HEPES, pH 7.3, vapor diffusion, hanging drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 6.05 79.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 137.226 α = 90 b = 137.226 β = 90 c = 111.87 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2007-07-11 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.401 58.521 99.1 0.077 0.077 7.331 6.9 8950 8512
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.58 99.6 0.01 1.032 0.8 7 1263
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.4 58.52 8512 433 99.34 0.283 0.281 0.2248 0.32 0.269 RANDOM 102.875
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.33 1.67 3.33 -5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.548 r_dihedral_angle_3_deg 19.891 r_dihedral_angle_4_deg 19.032 r_dihedral_angle_1_deg 6.825 r_angle_refined_deg 1.34 r_scangle_it 1.129 r_scbond_it 0.706 r_mcangle_it 0.468 r_nbtor_refined 0.311 r_mcbond_it 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.548 r_dihedral_angle_3_deg 19.891 r_dihedral_angle_4_deg 19.032 r_dihedral_angle_1_deg 6.825 r_angle_refined_deg 1.34 r_scangle_it 1.129 r_scbond_it 0.706 r_mcangle_it 0.468 r_nbtor_refined 0.311 r_mcbond_it 0.25 r_symmetry_vdw_refined 0.242 r_nbd_refined 0.24 r_metal_ion_refined 0.196 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.087 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1691 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 2
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction