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Crystal Structure of the Plasmodium Falciparum ubiquitin conjugating enzyme complex, PfUBC13-PfUev1a
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.5 M Mg Formate
20 % ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.856 α = 90 b = 154.856 β = 90 c = 81.36 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-07-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID .97937 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 99.8 0.087 0.059 33.1 10.9 38712 38635 66.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 99.7 0.881 2.05 8.3 3802
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 40 38587 38526 1930 99.84 0.249 0.249 0.248 0.2404 0.258 0.2464 RANDOM 50.613
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.62 0.81 1.62 -2.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.59 r_dihedral_angle_4_deg 15.12 r_dihedral_angle_3_deg 14.676 r_dihedral_angle_1_deg 4.53 r_angle_refined_deg 0.877 r_scangle_it 0.729 r_mcangle_it 0.607 r_scbond_it 0.445 r_mcbond_it 0.335 r_nbtor_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.59 r_dihedral_angle_4_deg 15.12 r_dihedral_angle_3_deg 14.676 r_dihedral_angle_1_deg 4.53 r_angle_refined_deg 0.877 r_scangle_it 0.729 r_mcangle_it 0.607 r_scbond_it 0.445 r_mcbond_it 0.335 r_nbtor_refined 0.294 r_nbd_refined 0.16 r_symmetry_hbond_refined 0.156 r_symmetry_vdw_refined 0.131 r_xyhbond_nbd_refined 0.085 r_chiral_restr 0.056 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3418 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms 5
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction