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Crystal Structure of Epiphyas postvittana Takeout 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 291 50mM MES pH 6.2-6.7, 20-25% PEG 3000, pH 6.5, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.13 42.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.454 α = 90 b = 45.178 β = 108.84 c = 53.778 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2007-08-07 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2007-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418 2 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97951 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.3 33.787 96.1 0.041 0.041 6.9 48865 15.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.37 78.3 0.407 0.407 1.9 4.7 5755
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 31.16 48848 2472 96.01 0.144 0.142 0.1406 0.182 0.1798 RANDOM 20.639
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -0.04 -0.01 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.665 r_dihedral_angle_3_deg 11.755 r_sphericity_free 8.435 r_dihedral_angle_4_deg 7.172 r_dihedral_angle_1_deg 6.287 r_scangle_it 5.238 r_sphericity_bonded 4.436 r_scbond_it 4.298 r_mcangle_it 3.226 r_mcbond_it 2.768
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.665 r_dihedral_angle_3_deg 11.755 r_sphericity_free 8.435 r_dihedral_angle_4_deg 7.172 r_dihedral_angle_1_deg 6.287 r_scangle_it 5.238 r_sphericity_bonded 4.436 r_scbond_it 4.298 r_mcangle_it 3.226 r_mcbond_it 2.768 r_rigid_bond_restr 2.652 r_angle_refined_deg 1.665 r_mcbond_other 1.223 r_angle_other_deg 0.915 r_symmetry_vdw_other 0.241 r_nbd_refined 0.238 r_xyhbond_nbd_refined 0.232 r_symmetry_hbond_refined 0.219 r_symmetry_vdw_refined 0.19 r_nbtor_refined 0.185 r_nbd_other 0.183 r_chiral_restr 0.107 r_nbtor_other 0.091 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1784 Nucleic Acid Atoms Solvent Atoms 308 Heterogen Atoms 53
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHARP phasing REFMAC refinement PDB_EXTRACT data extraction