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Crystal structure of bovine coupling factor B
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3DZE PDB entry 3DZE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.4 277 45% PPG 400, 100 mM Bis-Tris pH 6.5, pH 7.4, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.36 47.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.556 α = 90 b = 133.941 β = 90 c = 115.711 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 KOHZU 2006-10-12 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.111 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 95.8 0.076 3.9 16810
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 3 78.3 0.581 3.1 1349
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3DZE 2.9 30 16766 840 95.92 0.241 0.237 0.2343 0.329 0.3308 RANDOM 69.806
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.1 4.9 -3.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.85 r_dihedral_angle_4_deg 21.497 r_dihedral_angle_3_deg 20.468 r_dihedral_angle_1_deg 7.598 r_scangle_it 2.962 r_scbond_it 1.759 r_angle_refined_deg 1.746 r_mcangle_it 1.33 r_mcbond_it 0.692 r_chiral_restr 0.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.85 r_dihedral_angle_4_deg 21.497 r_dihedral_angle_3_deg 20.468 r_dihedral_angle_1_deg 7.598 r_scangle_it 2.962 r_scbond_it 1.759 r_angle_refined_deg 1.746 r_mcangle_it 1.33 r_mcbond_it 0.692 r_chiral_restr 0.107 r_bond_refined_d 0.017 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5598 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 4
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection