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CRYSTAL STRUCTURE OF Precorrin-6y C5,15-methyltransferase FROM Geobacter metallireducens GS-15
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 294 1800MM AMMONIUM TRI-CITRATE, PH 7.0, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.14 42.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.71 α = 90 b = 83.451 β = 95.72 c = 149.056 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2008-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 50 92.3 0.07 7.4 3.6 151124 -5 32.206
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.82 57.3 0.91 0.91 0.5 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 20 130412 4038 95.54 0.2171 0.21572 0.2126 0.26179 0.256 RANDOM 40.223
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 0.46 1.72 -0.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.905 r_dihedral_angle_4_deg 21.2 r_dihedral_angle_3_deg 15.96 r_scangle_it 6.973 r_dihedral_angle_1_deg 6.202 r_scbond_it 4.84 r_mcangle_it 4.409 r_mcbond_it 3.115 r_angle_refined_deg 1.309 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.905 r_dihedral_angle_4_deg 21.2 r_dihedral_angle_3_deg 15.96 r_scangle_it 6.973 r_dihedral_angle_1_deg 6.202 r_scbond_it 4.84 r_mcangle_it 4.409 r_mcbond_it 3.115 r_angle_refined_deg 1.309 r_nbtor_refined 0.303 r_symmetry_hbond_refined 0.185 r_nbd_refined 0.161 r_xyhbond_nbd_refined 0.151 r_symmetry_vdw_refined 0.134 r_chiral_restr 0.087 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11831 Nucleic Acid Atoms Solvent Atoms 537 Heterogen Atoms 20
Software Software Software Name Purpose SHELX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELX phasing