X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1TBM 

Crystallization

Crystal Properties
Matthews coefficientSolvent content
4.6973.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.857α = 90
b = 103.857β = 90
c = 270.118γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 2102006-07-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.0APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15099.820.0918.16.18705377963237.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1TBM2.15077963875999.820.182510.180170.20274RANDOM31.797
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.491.49-2.97
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.403
r_dihedral_angle_4_deg20.959
r_dihedral_angle_3_deg16.63
r_dihedral_angle_1_deg6.147
r_scangle_it6.133
r_scbond_it4.262
r_mcangle_it2.362
r_mcbond_it2.171
r_angle_refined_deg1.12
r_angle_other_deg0.807
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.403
r_dihedral_angle_4_deg20.959
r_dihedral_angle_3_deg16.63
r_dihedral_angle_1_deg6.147
r_scangle_it6.133
r_scbond_it4.262
r_mcangle_it2.362
r_mcbond_it2.171
r_angle_refined_deg1.12
r_angle_other_deg0.807
r_mcbond_other0.44
r_symmetry_vdw_refined0.294
r_symmetry_vdw_other0.24
r_nbd_refined0.238
r_nbd_other0.217
r_xyhbond_nbd_refined0.205
r_symmetry_hbond_refined0.202
r_nbtor_refined0.192
r_nbtor_other0.091
r_chiral_restr0.077
r_bond_refined_d0.013
r_gen_planes_refined0.013
r_gen_planes_other0.003
r_bond_other_d0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5412
Nucleic Acid Atoms
Solvent Atoms450
Heterogen Atoms66

Software

Software
Software NamePurpose
REFMACrefinement