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Crystal structure of AeD7 from Aedes Aegypti
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 17-20 % PEG 6000, 100 mM Tris HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.23 44.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.892 α = 90 b = 65.477 β = 112.74 c = 52.047 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 2006-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97926 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 99.8 0.089 15.4 4 75797 75797
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.35 99.9 0.304 5.3 3.7 7587
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.3 27.05 75797 75753 3810 99.81 0.189 0.187 0.182 0.214 0.2089 RANDOM 17.844
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.09 0.04 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.983 r_dihedral_angle_3_deg 12.091 r_dihedral_angle_4_deg 7.516 r_dihedral_angle_1_deg 4.601 r_sphericity_bonded 4.424 r_sphericity_free 3.569 r_scangle_it 2.767 r_scbond_it 1.905 r_mcangle_it 1.351 r_rigid_bond_restr 1.124
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.983 r_dihedral_angle_3_deg 12.091 r_dihedral_angle_4_deg 7.516 r_dihedral_angle_1_deg 4.601 r_sphericity_bonded 4.424 r_sphericity_free 3.569 r_scangle_it 2.767 r_scbond_it 1.905 r_mcangle_it 1.351 r_rigid_bond_restr 1.124 r_angle_refined_deg 1.085 r_mcbond_it 0.901 r_nbtor_refined 0.306 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.147 r_symmetry_hbond_refined 0.106 r_xyhbond_nbd_refined 0.093 r_chiral_restr 0.077 r_bond_refined_d 0.007 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2432 Nucleic Acid Atoms Solvent Atoms 544 Heterogen Atoms 33
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction EPICS-based data collection MLPHARE phasing