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Leishmania major Coproporphyrinogen III Oxidase with bound ligand
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 295 200 mM ammonium sulfate, 29% PEG 5000MME, 100 mM MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.23 44.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.075 α = 86.22 b = 53.625 β = 77.37 c = 65.599 γ = 61.08
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2006-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 83.9 0.109 5.5 1.6 18468
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 73.7 0.462 1.5 1633
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.5 50 17926 935 83.92 0.166 0.161 0.1676 0.259 0.2576 RANDOM 24.588
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.96 -0.5 1.04 1.32 -0.18 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.473 r_dihedral_angle_4_deg 16.317 r_dihedral_angle_3_deg 13.952 r_dihedral_angle_1_deg 5.668 r_scangle_it 2.447 r_scbond_it 1.527 r_angle_other_deg 1.198 r_mcangle_it 1.154 r_angle_refined_deg 1.143 r_mcbond_it 0.615
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.473 r_dihedral_angle_4_deg 16.317 r_dihedral_angle_3_deg 13.952 r_dihedral_angle_1_deg 5.668 r_scangle_it 2.447 r_scbond_it 1.527 r_angle_other_deg 1.198 r_mcangle_it 1.154 r_angle_refined_deg 1.143 r_mcbond_it 0.615 r_mcbond_other 0.1 r_chiral_restr 0.066 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4875 Nucleic Acid Atoms Solvent Atoms 520 Heterogen Atoms 38
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection HKL-2000 data reduction