☰ Navigation Tabs
Crystal structure of a putative f420 dependent nadp-reductase (arth_0613) from arthrobacter sp. fb24 at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 277 0.2M ammonium acetate, 30.0% polyethylene glycol 4000, 0.1M sodium acetate pH 4.6, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.94 36.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.974 α = 77.43 b = 47.053 β = 73.21 c = 61.125 γ = 64.33
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-06-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162,0.97951,0.97966 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 58.222 95 0.074 0.074 8.3 2 40912 14.781
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 81.9 0.265 0.265 2.5 2 5141
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 58.222 40802 2002 94.71 0.162 0.16 0.1698 0.199 0.2043 RANDOM 17.554
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 0.64 -0.14 -1 -0.14 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.363 r_dihedral_angle_4_deg 11.966 r_dihedral_angle_3_deg 9.614 r_dihedral_angle_1_deg 3.569 r_scangle_it 3.387 r_scbond_it 2.5 r_angle_refined_deg 1.566 r_mcangle_it 1.381 r_angle_other_deg 1.365 r_mcbond_it 0.923
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.363 r_dihedral_angle_4_deg 11.966 r_dihedral_angle_3_deg 9.614 r_dihedral_angle_1_deg 3.569 r_scangle_it 3.387 r_scbond_it 2.5 r_angle_refined_deg 1.566 r_mcangle_it 1.381 r_angle_other_deg 1.365 r_mcbond_it 0.923 r_symmetry_vdw_other 0.202 r_nbd_refined 0.172 r_nbtor_refined 0.145 r_mcbond_other 0.143 r_nbd_other 0.142 r_symmetry_vdw_refined 0.109 r_chiral_restr 0.082 r_nbtor_other 0.073 r_symmetry_hbond_refined 0.071 r_xyhbond_nbd_refined 0.07 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3178 Nucleic Acid Atoms Solvent Atoms 547 Heterogen Atoms 105
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction