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Complex of ARL2 and BART, Crystal Form 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KSG PDB ENTRY 1KSG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.9 293 0.2M MgCl2, 20% PEG 3350, pH 5.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.17 43.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.663 α = 90 b = 45.165 β = 90 c = 175.879 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 4 2007-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 1.0000 Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 50 99.4 0.161 0.161 11.4 5.3 5853 5818 1 1 87.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.3 3.42 97.3 0.759 0.759 2.4 5.3 565
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1KSG 3.3 40.18 5538 5520 297 99.66 0.2553 0.2553 0.25327 0.2503 0.29443 0.2316 RANDOM 76.322
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.66 6.28 -1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.892 r_dihedral_angle_3_deg 19.162 r_dihedral_angle_4_deg 13.718 r_dihedral_angle_1_deg 6.036 r_mcangle_it 1.972 r_scangle_it 1.896 r_rigid_bond_restr 1.638 r_scbond_it 1.464 r_mcbond_it 1.13 r_angle_refined_deg 1.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.892 r_dihedral_angle_3_deg 19.162 r_dihedral_angle_4_deg 13.718 r_dihedral_angle_1_deg 6.036 r_mcangle_it 1.972 r_scangle_it 1.896 r_rigid_bond_restr 1.638 r_scbond_it 1.464 r_mcbond_it 1.13 r_angle_refined_deg 1.074 r_symmetry_hbond_refined 0.69 r_sphericity_free 0.534 r_sphericity_bonded 0.471 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.256 r_nbd_refined 0.218 r_xyhbond_nbd_refined 0.147 r_metal_ion_refined 0.135 r_chiral_restr 0.075 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2526 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling CNS phasing