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Crystal structure of Putative Homoserine Dehydrogenase (NP_069768.1) from ARCHAEOGLOBUS FULGIDUS at 2.20 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 293 0.2M ammonium sulfate, 10.0% Glycerol, 20.0% polyethylene glycol 300, 0.1M phosphate-citrate pH 4.2, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.9 57.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.107 α = 90 b = 120.818 β = 90 c = 57.886 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 28.94 99.7 0.087 0.087 5.4 7.4 21542 47.26
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 99.5 0.52 0.52 1.3 4.9 1531
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 28.94 21529 1104 99.55 0.189 0.188 0.221 0.2665 RANDOM 43.193
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.32 -3.48 2.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.807 r_dihedral_angle_4_deg 16.439 r_dihedral_angle_3_deg 12.397 r_scangle_it 6.754 r_scbond_it 5.576 r_dihedral_angle_1_deg 4.01 r_mcangle_it 3.041 r_mcbond_it 2.075 r_angle_refined_deg 1.81 r_angle_other_deg 0.999
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.807 r_dihedral_angle_4_deg 16.439 r_dihedral_angle_3_deg 12.397 r_scangle_it 6.754 r_scbond_it 5.576 r_dihedral_angle_1_deg 4.01 r_mcangle_it 3.041 r_mcbond_it 2.075 r_angle_refined_deg 1.81 r_angle_other_deg 0.999 r_mcbond_other 0.438 r_symmetry_vdw_refined 0.248 r_symmetry_hbond_refined 0.246 r_nbd_refined 0.208 r_nbd_other 0.189 r_symmetry_vdw_other 0.183 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.123 r_chiral_restr 0.097 r_nbtor_other 0.089 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2378 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing