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Crystal structure of isolated C2 domain of the methionine uptake transporter
Crystallization Crystal Properties Matthews coefficient Solvent content 2.53 51.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.277 α = 90 b = 53.277 β = 90 c = 150.495 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 44.11 14058
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 44.11 14058 731 97.58 0.19303 0.19061 0.23845 0.2692 RANDOM 18.126
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 0.18 0.37 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.97 r_dihedral_angle_4_deg 23.181 r_dihedral_angle_3_deg 14.492 r_dihedral_angle_1_deg 7.939 r_scangle_it 6.34 r_scbond_it 3.905 r_mcangle_it 2.236 r_angle_refined_deg 1.984 r_mcbond_it 1.365 r_metal_ion_refined 0.765
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.97 r_dihedral_angle_4_deg 23.181 r_dihedral_angle_3_deg 14.492 r_dihedral_angle_1_deg 7.939 r_scangle_it 6.34 r_scbond_it 3.905 r_mcangle_it 2.236 r_angle_refined_deg 1.984 r_mcbond_it 1.365 r_metal_ion_refined 0.765 r_symmetry_hbond_refined 0.383 r_xyhbond_nbd_refined 0.365 r_nbtor_refined 0.31 r_nbd_refined 0.242 r_symmetry_vdw_refined 0.239 r_chiral_restr 0.134 r_bond_refined_d 0.026 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1570 Nucleic Acid Atoms Solvent Atoms 260 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection MOSFLM data reduction SCALA data scaling SHELXD phasing