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Crystal Structure of Drosophila Thioredoxin Reductase, wild-type
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.1 M MES, 20% PEG 4000, pH 5.5, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.8 56.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.971 α = 90 b = 150.971 β = 90 c = 267.706 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2008-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C 0.979 NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 32 100 0.089 8 12.3 55708
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.33 100 0.438 5.38 11.3 5517
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.25 31.17 55705 5611 99.98 0.184 0.177 0.1866 0.248 0.2515 RANDOM 14.901
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 0.24 0.48 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.563 r_dihedral_angle_4_deg 19.26 r_dihedral_angle_3_deg 18.558 r_dihedral_angle_1_deg 6.961 r_scangle_it 3.908 r_scbond_it 2.601 r_angle_refined_deg 2.045 r_mcangle_it 1.492 r_mcbond_it 0.953 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.563 r_dihedral_angle_4_deg 19.26 r_dihedral_angle_3_deg 18.558 r_dihedral_angle_1_deg 6.961 r_scangle_it 3.908 r_scbond_it 2.601 r_angle_refined_deg 2.045 r_mcangle_it 1.492 r_mcbond_it 0.953 r_nbtor_refined 0.312 r_symmetry_hbond_refined 0.242 r_nbd_refined 0.232 r_symmetry_vdw_refined 0.22 r_xyhbond_nbd_refined 0.179 r_chiral_restr 0.165 r_bond_refined_d 0.023 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7384 Nucleic Acid Atoms Solvent Atoms 512 Heterogen Atoms 106
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction Custom pXSCAN motion control software coupled with the Mar345 data collection software data collection