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A non-biological ATP binding protein with a Tyr-Phe mutation in the ligand binding domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting drop vapor diffusion 8.5 298 0.1 M sodium phosphate, 0.25 M sodium citrate, 0.3 M sodium chloride,
23% polyethylene glycol 400, 0.2 M ammonium acetate, pH 8.5, sitting drop vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.36 71.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.742 α = 90 b = 71.742 β = 90 c = 55.488 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 143 IMAGE PLATE RIGAKU RAXIS IV++ mirrors 2008-05-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 25 99.7 0.084 18.9 5.6 5940
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 100 0.625 5.2 584
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 23.49 5934 267 99.71 0.186 0.184 0.23 0.2062 RANDOM 42.155
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.03 0.05 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.47 r_dihedral_angle_3_deg 17.393 r_dihedral_angle_4_deg 14.388 r_scangle_it 6.485 r_dihedral_angle_1_deg 6.079 r_scbond_it 3.82 r_angle_refined_deg 2.298 r_mcangle_it 2.194 r_mcbond_it 1.118 r_angle_other_deg 1.015
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.47 r_dihedral_angle_3_deg 17.393 r_dihedral_angle_4_deg 14.388 r_scangle_it 6.485 r_dihedral_angle_1_deg 6.079 r_scbond_it 3.82 r_angle_refined_deg 2.298 r_mcangle_it 2.194 r_mcbond_it 1.118 r_angle_other_deg 1.015 r_chiral_restr 0.132 r_bond_refined_d 0.024 r_gen_planes_refined 0.009 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 582 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 54
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data scaling