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The thermo- and acido-stable ORF-99 from the archaeal virus AFV1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 293 33% MPD, 0.2M CaCl2, 0.1M Hepes, pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.07 59.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.112 α = 90 b = 97.688 β = 90 c = 103.679 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.979 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 45 100 0.095 0.095 25 13.8 37209 37209 23.58
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.05 2.16 100 0.399 0.399 7 14.1 5344
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.05 30 35982 1156 100 0.1915 0.1905 0.2249 0.22106 0.2482 RANDOM 18.343
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.04 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.74 r_dihedral_angle_4_deg 15.002 r_dihedral_angle_3_deg 12.346 r_dihedral_angle_1_deg 8.958 r_scangle_it 3.548 r_scbond_it 2.378 r_angle_refined_deg 1.44 r_mcangle_it 1.364 r_mcbond_it 1.177 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.74 r_dihedral_angle_4_deg 15.002 r_dihedral_angle_3_deg 12.346 r_dihedral_angle_1_deg 8.958 r_scangle_it 3.548 r_scbond_it 2.378 r_angle_refined_deg 1.44 r_mcangle_it 1.364 r_mcbond_it 1.177 r_nbtor_refined 0.306 r_xyhbond_nbd_refined 0.294 r_symmetry_vdw_refined 0.24 r_nbd_refined 0.21 r_symmetry_hbond_refined 0.176 r_metal_ion_refined 0.113 r_chiral_restr 0.097 r_symmetry_metal_ion_refined 0.06 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3366 Nucleic Acid Atoms Solvent Atoms 368 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling SHELXS phasing