☰ Navigation Tabs
Crystal Structure of a Soluble Rieske Ferredoxin from Mus musculus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 Protein Solution (~15 mg/ml native protein,
0.025 M NaCl, 0.005 M MOPS pH 7.0) mixed in a 1:1 ratio with Well Solution
( 25% MEPEG 5K, 0.12 M Trisodium citrate, 0.10 M MES ph 6.0)
Cryoprotected with 15% ethylene glycol;
Mercury derivative crystal soaked overnight in
in mother liquor containing 0.002 M thimersol, vapor diffusion, hanging drop, temperature 293K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.1 40.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.413 α = 90 b = 52.413 β = 90 c = 108.808 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focus K-B pair Si plus Pt, Rh coatings 2007-07-06 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Rosenbaum-Rock vertical focusing mirror 2007-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.96419 APS 23-ID-B 2 SYNCHROTRON APS BEAMLINE 22-BM 1.000 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.07 50 99.4 0.057 18.354 12.7 9806
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.07 2.14 95.5 0.621 1.845 7.1 900
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.071 37.75 9754 472 99.399 0.2 0.199 0.1902 0.228 0.2268 RANDOM 46.027
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.148 0.148 -0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.566 r_dihedral_angle_3_deg 15.863 r_dihedral_angle_4_deg 14 r_dihedral_angle_1_deg 6.528 r_scangle_it 3.12 r_scbond_it 2.169 r_angle_refined_deg 1.848 r_mcangle_it 1.486 r_mcbond_it 1.018 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.566 r_dihedral_angle_3_deg 15.863 r_dihedral_angle_4_deg 14 r_dihedral_angle_1_deg 6.528 r_scangle_it 3.12 r_scbond_it 2.169 r_angle_refined_deg 1.848 r_mcangle_it 1.486 r_mcbond_it 1.018 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.235 r_nbd_refined 0.215 r_symmetry_hbond_refined 0.168 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.109 r_bond_refined_d 0.019 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1099 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms 8
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction