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Crystal structure of a putative esterase from Staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 12% PEG3350, 0.1M NaBr, 15mM Hexamine Cobalt(III) Chloride, cryo-protected using 30% DMSO, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.14 42.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.888 α = 80.82 b = 46.412 β = 89.97 c = 91.688 γ = 69.51
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-06-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.97930 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 50 97.5 0.061 22.9 3.9 41127
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.08 91.1 0.093 3.9 3812
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.01 41.56 41116 2083 97.39 0.16 0.158 0.1609 0.192 0.1952 RANDOM 13.453
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.336 r_dihedral_angle_4_deg 17.643 r_dihedral_angle_3_deg 12.701 r_dihedral_angle_1_deg 5.466 r_scangle_it 3.702 r_scbond_it 2.29 r_angle_refined_deg 1.26 r_mcangle_it 1.14 r_mcbond_it 0.567 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.336 r_dihedral_angle_4_deg 17.643 r_dihedral_angle_3_deg 12.701 r_dihedral_angle_1_deg 5.466 r_scangle_it 3.702 r_scbond_it 2.29 r_angle_refined_deg 1.26 r_mcangle_it 1.14 r_mcbond_it 0.567 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.226 r_nbd_refined 0.208 r_symmetry_hbond_refined 0.155 r_xyhbond_nbd_refined 0.121 r_metal_ion_refined 0.098 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4831 Nucleic Acid Atoms Solvent Atoms 280 Heterogen Atoms 110
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction JDirector data collection HKL-2000 data reduction HKL-2000 data scaling