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Crystal structure of a xisi-like protein (npun_ar114) from nostoc punctiforme pcc 73102 at 2.30 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 0.15M lithium sulfate, 26.0% polyethylene glycol 4000, 0.1M TRIS pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.2 43.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.846 α = 90 b = 79.846 β = 90 c = 74.256 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-04-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97937,0.97854 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 28.228 99.9 0.088 0.088 6.5 7 11187 46.112
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 100 0.766 0.766 1 7.2 806
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 28.228 11148 531 99.91 0.208 0.206 0.2093 0.259 0.2656 RANDOM 36.396
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.77 0.77 -1.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.086 r_dihedral_angle_4_deg 23.645 r_dihedral_angle_3_deg 16.216 r_scangle_it 6.866 r_dihedral_angle_1_deg 6.735 r_scbond_it 5.269 r_mcangle_it 2.825 r_mcbond_it 1.913 r_angle_refined_deg 1.487 r_angle_other_deg 1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.086 r_dihedral_angle_4_deg 23.645 r_dihedral_angle_3_deg 16.216 r_scangle_it 6.866 r_dihedral_angle_1_deg 6.735 r_scbond_it 5.269 r_mcangle_it 2.825 r_mcbond_it 1.913 r_angle_refined_deg 1.487 r_angle_other_deg 1.01 r_mcbond_other 0.493 r_symmetry_vdw_other 0.299 r_symmetry_vdw_refined 0.215 r_nbd_other 0.204 r_nbd_refined 0.199 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.096 r_nbtor_other 0.088 r_bond_refined_d 0.015 r_bond_other_d 0.008 r_gen_planes_refined 0.006 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1807 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing