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Structure of yeast Grx2-C30S mutant with glutathionyl mixed disulfide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.4 298 PEG 4000, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 1.782967 31.013851
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.008 α = 90 b = 45.205 β = 90 c = 105.035 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MAR CCD 165 mm 2006-08-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.427 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 37.01 99.7 0.389 23.6 8.6 14326 14.753
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 2.01 98.3 0.07 4.5 8.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.91 34.9 14290 720 99.9 0.201 0.198 0.261 0.233 RANDOM 14.753
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 -0.1 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.183 r_dihedral_angle_3_deg 15.405 r_dihedral_angle_1_deg 13.351 r_scangle_it 3.124 r_scbond_it 1.922 r_angle_refined_deg 1.434 r_mcangle_it 1.173 r_mcbond_it 0.661 r_nbtor_refined 0.311 r_nbd_refined 0.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.183 r_dihedral_angle_3_deg 15.405 r_dihedral_angle_1_deg 13.351 r_scangle_it 3.124 r_scbond_it 1.922 r_angle_refined_deg 1.434 r_mcangle_it 1.173 r_mcbond_it 0.661 r_nbtor_refined 0.311 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.22 r_xyhbond_nbd_refined 0.182 r_symmetry_hbond_refined 0.165 r_chiral_restr 0.102 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1649 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 40
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection