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Crystal structure of a poplar thioredoxin h mutant, PtTrxh4C61S
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other wild-type PtTrxh4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microbatch under oil 8.2 293 1.0 M sodium / potassium phosphate , pH 8.2, microbatch under oil, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.91 35.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.776 α = 90 b = 44.103 β = 90 c = 85.678 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2005-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 1.24 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 98.5 16333 16333
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 98.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT wild-type PtTrxh4 1.6 30 16295 825 98.61 0.191 0.191 0.191 0.1887 0.196 0.1955 RANDOM 21.691
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 0.11 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.575 r_dihedral_angle_3_deg 12.381 r_dihedral_angle_4_deg 10.51 r_dihedral_angle_1_deg 5.604 r_scangle_it 3.249 r_scbond_it 2.107 r_mcangle_it 1.364 r_angle_refined_deg 1.239 r_mcbond_it 0.797 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.575 r_dihedral_angle_3_deg 12.381 r_dihedral_angle_4_deg 10.51 r_dihedral_angle_1_deg 5.604 r_scangle_it 3.249 r_scbond_it 2.107 r_mcangle_it 1.364 r_angle_refined_deg 1.239 r_mcbond_it 0.797 r_nbtor_refined 0.306 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.174 r_xyhbond_nbd_refined 0.135 r_symmetry_hbond_refined 0.126 r_chiral_restr 0.087 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1021 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 5
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection MOLREP phasing