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Large c-terminal domain of influenza a virus RNA-dependent polymerase PB2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 277 2.2M formate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.46 50.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.527 α = 90 b = 52.527 β = 90 c = 156.357 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-11-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.07172, 1.07204, 1.05382 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 98.8 7319 7328 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.7 34.27 7319 6940 335 98.74 0.23995 0.23741 0.2438 0.29041 0.2811 RANDOM 49.776
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.57 1.28 2.57 -3.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 9.087 r_scangle_it 3.485 r_angle_other_deg 2.088 r_angle_refined_deg 2.063 r_scbond_it 1.998 r_mcangle_it 1.92 r_mcbond_it 1.218 r_symmetry_vdw_other 0.283 r_nbd_other 0.271 r_nbd_refined 0.254
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 9.087 r_scangle_it 3.485 r_angle_other_deg 2.088 r_angle_refined_deg 2.063 r_scbond_it 1.998 r_mcangle_it 1.92 r_mcbond_it 1.218 r_symmetry_vdw_other 0.283 r_nbd_other 0.271 r_nbd_refined 0.254 r_symmetry_hbond_refined 0.244 r_xyhbond_nbd_refined 0.235 r_symmetry_vdw_refined 0.197 r_chiral_restr 0.12 r_nbtor_other 0.099 r_bond_refined_d 0.025 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1642 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing