☰ Navigation Tabs
Histidinol-phosphate aminotransferase from Corynebacterium glutamicum
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UU1 PDB ENTRY 1UU1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 9% PEG 6K, 1M lithium acetate, 0.1M MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.57 52.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.34 α = 90 b = 102.34 β = 90 c = 140.108 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 54.9 99.8 0.051 0.051 25.5 6.2 43528 43528 41
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.32 99.7 0.53 0.53 4.7 6.2 6295
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UU1 2.2 25 41180 41180 2175 99.32 0.23908 0.23908 0.23708 0.2396 0.27674 0.2801 RANDOM 32.646
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.615 r_dihedral_angle_4_deg 19.831 r_dihedral_angle_3_deg 15.603 r_dihedral_angle_1_deg 6.154 r_scangle_it 2.082 r_scbond_it 1.388 r_angle_refined_deg 1.347 r_angle_other_deg 1.01 r_mcangle_it 0.995 r_mcbond_it 0.863
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.615 r_dihedral_angle_4_deg 19.831 r_dihedral_angle_3_deg 15.603 r_dihedral_angle_1_deg 6.154 r_scangle_it 2.082 r_scbond_it 1.388 r_angle_refined_deg 1.347 r_angle_other_deg 1.01 r_mcangle_it 0.995 r_mcbond_it 0.863 r_symmetry_vdw_other 0.239 r_nbd_refined 0.205 r_nbd_other 0.198 r_nbtor_refined 0.174 r_symmetry_hbond_refined 0.174 r_mcbond_other 0.147 r_symmetry_vdw_refined 0.142 r_xyhbond_nbd_refined 0.14 r_nbtor_other 0.087 r_chiral_restr 0.078 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5411 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement DNA data collection MOSFLM data reduction SCALA data scaling MOLREP phasing