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Crystal structure of Mst1 kinase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CKW PDB entry 3CKW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10.5 294 1700mM Ammonium sulfate, 300mM Lithium sulfate, 100mM CAPS pH 10.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.05 59.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.977 α = 90 b = 105.151 β = 90 c = 110.955 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm KV mirrors 2004-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9794 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 90.2 0.118 6.5 3.2 40513 27.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.32 93.9 0.439 2.7 3.1 6082
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB entry 3CKW 2.2 30 40443 2022 90.2 0.208 0.208 0.1995 0.244 random
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 1.394 r_bond_refined_d 0.015 r_bond_d_na r_bond_d_prot r_angle_d_na r_angle_d_prot r_angle_deg r_angle_deg_na r_angle_deg_prot r_dihedral_angle_d
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 1.394 r_bond_refined_d 0.015 r_bond_d_na r_bond_d_prot r_angle_d_na r_angle_d_prot r_angle_deg r_angle_deg_na r_angle_deg_prot r_dihedral_angle_d r_dihedral_angle_d_na r_dihedral_angle_d_prot r_improper_angle_d r_improper_angle_d_na r_improper_angle_d_prot r_mcbond_it r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4283 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms
Software Software Software Name Purpose MAR345 data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling