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CRYSTAL STRUCTURE OF A PUTATIVE DEHYDRATASE FROM THE NTF2-LIKE FAMILY (SAV_4671) FROM STREPTOMYCES AVERMITILIS AT 2.10 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.04 293 NANODROP, 34.5% PEG 400, 0.2M Magnesium chloride, 0.1M HEPES pH 7.04, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.67 53.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103 α = 90 b = 128.75 β = 90 c = 44.38 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-01-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162, 0.97978 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 29.553 97.4 0.039 13.7 35037 -3 36.671
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 94.9 0.458 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 29.553 34988 1752 99.03 0.201 0.199 0.235 0.2452 RANDOM 34.351
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.21 0.8 -2.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.9 r_dihedral_angle_3_deg 15.587 r_dihedral_angle_4_deg 15.308 r_dihedral_angle_1_deg 6.071 r_scangle_it 2.905 r_scbond_it 2.099 r_angle_refined_deg 1.668 r_angle_other_deg 1.447 r_mcangle_it 1.321 r_mcbond_it 0.731
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.9 r_dihedral_angle_3_deg 15.587 r_dihedral_angle_4_deg 15.308 r_dihedral_angle_1_deg 6.071 r_scangle_it 2.905 r_scbond_it 2.099 r_angle_refined_deg 1.668 r_angle_other_deg 1.447 r_mcangle_it 1.321 r_mcbond_it 0.731 r_mcbond_other 0.19 r_chiral_restr 0.083 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3221 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHARP phasing SHELXD phasing