☰ Navigation Tabs
Structure of the RNA polymerase II CTD-interacting domain of Nrd1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 100 mM Na-citrate buffer, 1.4 M (NH4)2SO4, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.28 62.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.2 α = 90 b = 80.2 β = 90 c = 62.67 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.07176 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 99 0.035 19.3 3 13057
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 100 0.236 4.7 752
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.1 20 13057 705 99.35 0.19288 0.19 0.1879 0.22 0.2101 RANDOM 47.037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.91 0.95 1.91 -2.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.66 r_dihedral_angle_3_deg 17.296 r_dihedral_angle_4_deg 16.548 r_dihedral_angle_1_deg 5.395 r_scangle_it 3.749 r_scbond_it 2.623 r_angle_refined_deg 1.714 r_mcangle_it 1.526 r_mcbond_it 0.961 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.66 r_dihedral_angle_3_deg 17.296 r_dihedral_angle_4_deg 16.548 r_dihedral_angle_1_deg 5.395 r_scangle_it 3.749 r_scbond_it 2.623 r_angle_refined_deg 1.714 r_mcangle_it 1.526 r_mcbond_it 0.961 r_nbtor_refined 0.293 r_nbd_refined 0.225 r_symmetry_vdw_refined 0.193 r_symmetry_hbond_refined 0.151 r_chiral_restr 0.124 r_xyhbond_nbd_refined 0.12 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1149 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SOLVE phasing