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Crystal structure of a protein of unknown function with a cupin-like fold (reut_b4571) from ralstonia eutropha jmp134 at 2.60 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 277 NANODROP, 1.6M (NH4)2SO4, 0.1M Citrate pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.54 51.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.21 α = 90 b = 89.13 β = 90 c = 212.52 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 KOHZU: Double crystal Si(111) 2007-10-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9537, 0.9798, 0.9796 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 29.604 98 0.058 11.56 46886 -3 51.514
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 95.1 0.346 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.6 29.604 46841 2366 99.16 0.205 0.203 0.237 0.2239 RANDOM 31.895
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.58 -1.22 -1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.665 r_dihedral_angle_4_deg 16.35 r_dihedral_angle_3_deg 13.46 r_scangle_it 4.431 r_dihedral_angle_1_deg 3.572 r_scbond_it 3.142 r_mcangle_it 1.764 r_angle_refined_deg 1.653 r_mcbond_it 1.094 r_angle_other_deg 1.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.665 r_dihedral_angle_4_deg 16.35 r_dihedral_angle_3_deg 13.46 r_scangle_it 4.431 r_dihedral_angle_1_deg 3.572 r_scbond_it 3.142 r_mcangle_it 1.764 r_angle_refined_deg 1.653 r_mcbond_it 1.094 r_angle_other_deg 1.012 r_symmetry_hbond_refined 0.331 r_mcbond_other 0.287 r_nbd_refined 0.203 r_nbtor_refined 0.191 r_symmetry_vdw_refined 0.177 r_nbd_other 0.175 r_xyhbond_nbd_refined 0.168 r_symmetry_vdw_other 0.142 r_symmetry_hbond_other 0.132 r_xyhbond_nbd_other 0.111 r_nbtor_other 0.089 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9688 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 109
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction ADSC data collection XDS data reduction SHELXD phasing autoSHARP phasing