☰ Navigation Tabs
Crystal structure of PCI domain from A. thaliana COP9 signalosome subunit 7 (CSN7)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 292 23% w/v PEG 8000, 0.1M sodium cacodylate (pH 7.2), 0.06-0.08M Mg-acetate tetrahydrate, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.36 47.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.094 α = 90 b = 85.796 β = 90 c = 72.343 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 210 2006-11-30 M SINGLE WAVELENGTH 2 1 x-ray CCD MAR CCD 165 mm 2005-09-20 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1 2 SYNCHROTRON ESRF BEAMLINE BM16 0.97944, 0.97967 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.5 50 99.5 0.035 47.9 8.9 28989 28844
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.5 1.55 97.1 0.269 6.7 5.8 2763
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 36.9 28708 27494 1186 99.53 0.16559 0.16559 0.16413 0.1648 0.19996 0.1965 RANDOM 17.727
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.54 0.35 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.262 r_dihedral_angle_4_deg 18.597 r_dihedral_angle_3_deg 11.028 r_dihedral_angle_1_deg 7.288 r_scangle_it 4.518 r_scbond_it 3.439 r_mcangle_it 2.231 r_mcbond_it 2.055 r_angle_refined_deg 1.54 r_angle_other_deg 0.999
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.262 r_dihedral_angle_4_deg 18.597 r_dihedral_angle_3_deg 11.028 r_dihedral_angle_1_deg 7.288 r_scangle_it 4.518 r_scbond_it 3.439 r_mcangle_it 2.231 r_mcbond_it 2.055 r_angle_refined_deg 1.54 r_angle_other_deg 0.999 r_mcbond_other 0.334 r_symmetry_vdw_refined 0.331 r_nbd_refined 0.23 r_symmetry_vdw_other 0.203 r_nbd_other 0.201 r_symmetry_hbond_refined 0.2 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.173 r_metal_ion_refined 0.099 r_chiral_restr 0.095 r_nbtor_other 0.09 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d 0.007 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1266 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction SCALEPACK data scaling SHARP phasing