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Crystal structure of purple-fluorescent antibody EP2-25C10
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HFM PDB ENTRY 3HFM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 AMMONIUM SULFATE, LITHIUM SULFATE, ACETATE, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K, pH 4.50
Crystal Properties Matthews coefficient Solvent content 3.04 59.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.13 α = 90 b = 59.46 β = 100.37 c = 149.37 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 FLAT MIRROR (VERTICAL FOCUSING) 2002-01-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.99 25 99.3 0.112 8.6 2.6 20613 58.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.99 3.07 89.5 0.479 1.6 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION PHASER THROUGHOUT PDB ENTRY 3HFM 2.99 24.46 18943 960 100 0.213 0.211 0.2151 0.255 0.2587 RANDOM 18.28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.65 -1.97 -0.03 1.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.735 r_dihedral_angle_4_deg 21.498 r_dihedral_angle_3_deg 17.637 r_dihedral_angle_1_deg 7.131 r_angle_refined_deg 1.481 r_scangle_it 1.322 r_angle_other_deg 0.911 r_scbond_it 0.881 r_mcangle_it 0.5 r_mcbond_it 0.359
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.735 r_dihedral_angle_4_deg 21.498 r_dihedral_angle_3_deg 17.637 r_dihedral_angle_1_deg 7.131 r_angle_refined_deg 1.481 r_scangle_it 1.322 r_angle_other_deg 0.911 r_scbond_it 0.881 r_mcangle_it 0.5 r_mcbond_it 0.359 r_symmetry_hbond_refined 0.313 r_symmetry_vdw_other 0.28 r_symmetry_vdw_refined 0.278 r_nbd_refined 0.217 r_nbd_other 0.214 r_nbtor_refined 0.195 r_xyhbond_nbd_refined 0.142 r_nbtor_other 0.093 r_xyhbond_nbd_other 0.089 r_mcbond_other 0.085 r_chiral_restr 0.077 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6634 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 43
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling