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Purple-fluorescent antibody EP2-25C10 in complex with its stilbene hapten
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2NZS PDB ENTRY 2NZS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 AMMONIUM SULFATE, LITHIUM SULFATE, ACETATE, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K, pH 4.50
Crystal Properties Matthews coefficient Solvent content 3.06 59.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.99 α = 91.98 b = 72.48 β = 106.11 c = 77.23 γ = 114.15
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 MONOCHROMATOR 2002-08-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 97.9 0.083 11.1 1.9 37156 50.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.56 97.4 0.525 1.6 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2NZS 2.5 29.88 33487 1746 100 0.212 0.211 0.243 0.2329 RANDOM 33.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -1.28 0.03 -2.56 -2.53 1.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.768 r_dihedral_angle_4_deg 23.751 r_dihedral_angle_3_deg 16.361 r_dihedral_angle_1_deg 6.43 r_scangle_it 1.628 r_angle_refined_deg 1.304 r_scbond_it 1.194 r_angle_other_deg 1.096 r_mcangle_it 0.778 r_mcbond_it 0.746
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.768 r_dihedral_angle_4_deg 23.751 r_dihedral_angle_3_deg 16.361 r_dihedral_angle_1_deg 6.43 r_scangle_it 1.628 r_angle_refined_deg 1.304 r_scbond_it 1.194 r_angle_other_deg 1.096 r_mcangle_it 0.778 r_mcbond_it 0.746 r_symmetry_vdw_other 0.393 r_symmetry_vdw_refined 0.255 r_nbd_other 0.213 r_nbd_refined 0.197 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.132 r_mcbond_other 0.092 r_nbtor_other 0.087 r_chiral_restr 0.075 r_symmetry_hbond_refined 0.066 r_bond_refined_d 0.013 r_bond_other_d 0.008 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6641 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms 52
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling