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High-resolution structure of blue fluorescent antibody EP2-19G2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FL3 PDB ENTRY 1FL3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 18% PEG 8000, 0.1M ACETATE, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K, pH 4.50
Crystal Properties Matthews coefficient Solvent content 2.35 47.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.891 α = 90 b = 87.891 β = 90 c = 114.111 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD FLAT COLLIMATING MIRROR, TOROID FOCUSING MIRROR 2005-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.9 0.05 45.4 7.5 49748 25.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 100 0.772 2.8 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FL3 1.7 28.76 47209 2518 99.9 0.193 0.191 0.2605 0.231 0.2943 RANDOM 33.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.62 0.62 -1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.031 r_dihedral_angle_4_deg 17.65 r_dihedral_angle_3_deg 12.269 r_dihedral_angle_1_deg 6.782 r_scangle_it 3.091 r_scbond_it 2.328 r_angle_refined_deg 1.609 r_mcangle_it 1.454 r_mcbond_it 1.237 r_angle_other_deg 0.912
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.031 r_dihedral_angle_4_deg 17.65 r_dihedral_angle_3_deg 12.269 r_dihedral_angle_1_deg 6.782 r_scangle_it 3.091 r_scbond_it 2.328 r_angle_refined_deg 1.609 r_mcangle_it 1.454 r_mcbond_it 1.237 r_angle_other_deg 0.912 r_mcbond_other 0.26 r_symmetry_vdw_other 0.247 r_nbd_other 0.21 r_symmetry_hbond_refined 0.207 r_symmetry_vdw_refined 0.195 r_nbd_refined 0.192 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.101 r_nbtor_other 0.088 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3287 Nucleic Acid Atoms Solvent Atoms 332 Heterogen Atoms 6
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling