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Structure of P97/vcp in complex with ADP/ADP.alfx
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 PEG 3350, HEPES, NAF, PH 7.0, VAPOR DIFFUSION, HANGING DROP, pH 7.00, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.33 71.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 162.66 α = 90 b = 178.02 β = 90 c = 321.14 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2002-08-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4.4 29.9 91 0.103 10.1 6.2 28110 0.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 4.4 4.67 2372
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION WITH MOLECULAR REPLACEMENT THROUGHOUT 4.4 29.87 24583 1622 82.2 0.229 0.229 0.2333 0.286 0.2834 RANDOM 248.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -42.19 -1.53 43.72
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.7 c_angle_deg 1.37 c_improper_angle_d 0.9 c_bond_d 0.007 c_mcbond_it c_mcangle_it c_scbond_it c_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16952 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 174
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing